species:   Vovol
pid:       PID1208
parent:    vvo-m0828
paralog:   
locus:     KB722759.1:522888-522994
matures:   ['AGGGAUUGGACUUGCUGGAAUGG', 'AGUACCGGCGCUGAUUGUGG']
srr:       SRR10727297
genome:    /Users/jax/+Genomes/Fungal_genomes/Vovol.GCA_000349905.1_VVO_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Gong2020-xh.SRR10727297.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Gong2020-xh.SRR10727297.cram KB722759.1:522888-522994

17 out of bounds
4 alignments
4 proper strand
2 stranded perfect matches

                                *************              **************                                  
UGCGUUUCUUGUCCAGAUCGCAAGUACCGGCGCUGAUUGUGGCUGUGACGAUGCAUAGAGGGCUAGGGAUUGGACUUGCUGGAAUGGAAAUAGGGACAGGAGAAGCA
(((.((((((((((..((..(..((.((((((((((((.(((((.(............).)))))..))))))...)))))).)).)..))..)))))))))).)))
----------------------------------------------------------------AGGGAUUGGACUUGCUGGAAUGG-------------------- l=23 a=0 c
----------------------AGUACCGGCGCUGAUUGUGG----------------------------------------------------------------- l=20 a=0 c*
----------------------------------GAUUGUGGCUG-------------------------------------------------------------- l=11 a=1 ma
-------------------------------------------------------------GCUAGGGAUUGG---------------------------------- l=12 a=0 ma*

----------------------------------GAUUGUGGCUG-------------------------------------------------------------- l=11 a=1 (ma)
-----------------------------------------------------CAUAGAGGGCU------------------------------------------- l=11 a=1 
--------------------------------------------------------------CUAGGGAUcGGAC-------------------------------- l=13 a=2 

mb-01111
ax-1011001
ku-01
ss-100011111100
fn-011
